Bioconductor Pca plot

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DeSeq2 PCA plot

7.4 years ago sarahmacdonald86 • 0

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4.3k

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deseq2 pca plot

updated 7.4 years ago by Michael Love 42k • written 7.4 years ago by pkachroo ▴ 10

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pca pca plot pcagopromoter

updated 7.2 years ago by James W. MacDonald 66k • written 7.2 years ago by sherman.leung ▴ 10

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786

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pca plot pca scree plot pca2go

updated 6.1 years ago by Steve Lianoglou ★ 13k • written 6.1 years ago by suranandbabu85 • 0

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977

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PCA plot RNAseq

updated 4.3 years ago by Kevin Blighe ★ 3.9k • written 4.3 years ago by rajeshparmar4 ▴ 10

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Answer: Get gene symbols for a set of hg19 coordinates by ATpoint ★ 4.1k

Simply download a GTF file (for example from GENCODE) matching the current genome and/or annotation version you are using in your project a…

Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by ATpoint ★ 4.1k

Try the mirror suggestion for now: https://support.bioconductor.org/p/9153734/#9153755

Comment: unable to access bioconductor packages - qvalue installation failed... by ATpoint ★ 4.1k

Seems to be a general problem at the moment, can reproduce. The the mirror suggestion here: https://support.bioconductor.org/p/9153734/#915…

Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman by Karosham.Reddy • 0

Thank you for the suggestion the ENmix version is using is ENmix_1.38.01. I tried your suggested code, R identified the idat files but sti…

Comment: pathview error by Guido Hooiveld ★ 4.0k

> Will removing the NA values help solve the problem? Did you try? And, FWIW, in the cases I had ensembl-based RNA-seq datasets I removed…

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Comment: recount3 problem downloading data from source sra

Not able to install any Bioconductor 3.18 package [unable to access index]

unable to access bioconductor packages - qvalue installation failed...

Not able to install any Bioconductor 3.18 package [unable to access index]

can't open mghp.osn.xsede.org

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